Okay, more weirdness. Below is a series of measurements I made with the new soundcard cal file (which seemed to only affect the low end anyways).
Speaker is a Magnepan MG10.1. Measurements were at the listening position. Red is the current ECM8k cal file, Blue is the old cal file, and Green is the Rat Shack meter used as a mic (with appropriate cal file and C weighting)
So with 2 different mics, I get the same fast rolloff in the top octave. It looks like the new mic file fixes the baffle "bump".
To see if it's a vertical/horizontal thing, I ran a semi-nearfield measurement of the speaker both horizontal and vertical using the new "split" ECM8k cal file.
Purple is vertical, yellow is horizontal. Both have the rolloff at 15kHz.
So I believe we've ruled out the mic, and via nearfield measurements ruled out the speaker. It's not the calibration or loop, but it seems to be the soundcard.
Any thoughts folks?